About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_17933363_17934105_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17933363 - 17934105
Intron Length:
743

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGGCTT
5'SS Class:
major
3'SS Sequence:
ATTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATACAA
U12 Branch Point Sequence:
TACTATACAATT
Flanking Amino Acid:
TVIKSSLSEKGRQEDAEEYL
Intron Amino Acid Position:
509

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
71.2
40.2
Major BPS
65.8
0.39
1
73.3
31.3
Major PPT
93.9
0.99
0.6
92.8
24.8
Minor 5ss
37.3
-1.4
3.5
55.3
48.9
Minor BPS
45.3
-0.2
1.9
63.29
41.1

Associated Gene:

Gene:
USP10
Ensembl Gene ID:
ENSAPLG00000012121
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037500
17914670 - 17948032
33363
ENSAPLT00000017372
17899300 - 17946067
46768
ENSAPLT00000012671
17909286 - 17948032
38747