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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_17935630_17939670_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17935630 - 17939670
Intron Length:
4041

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAGTAC
5'SS Class:
major
3'SS Sequence:
TTTTTTCCTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TACACTTTATTT
Flanking Amino Acid:
PITDIFGGHIRSVVYQQSSK
Intron Amino Acid Position:
602

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
65.1
35.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
89.2
0.88
0.6
86
21
Minor 5ss
42.5
-0.8
3.2
57.8
47.2
Minor BPS
55.6
0.25
1.6
69.39
42.1

Associated Gene:

Gene:
USP10
Ensembl Gene ID:
ENSAPLG00000012121
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037500
17914670 - 17948032
33363
ENSAPLT00000017372
17899300 - 17946067
46768
ENSAPLT00000012671
17909286 - 17948032
38747