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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_17939837_17944007_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17939837 - 17944007
Intron Length:
4171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TTTTTCTTGATC
Flanking Amino Acid:
QGYTTKTKQEVEISRRVTLE
Intron Amino Acid Position:
658

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.8
85.7
25.6
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
89
0.88
0.6
88.7
20.7
Minor 5ss
46.8
-0.3
2.7
66.4
45.1
Minor BPS
80
0.93
1
84.94
26.6

Associated Gene:

Gene:
USP10
Ensembl Gene ID:
ENSAPLG00000012121
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017372
17899300 - 17946067
46768
ENSAPLT00000012671
17909286 - 17948032
38747
ENSAPLT00000037500
17914670 - 17948032
33363