Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_17971724_17973133_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17971724 - 17973133

Intron Length:

1410

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGTGTGGG

5'SS Class:

strong_major

3'SS Sequence:

CCTTTCTAACAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTATTTTTAATC

Flanking Amino Acid:

GGCQNNLCYKDYRYEDTFIT

Intron Amino Acid Position:

238

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.9

0.73

0.9

64.9

41.2

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

0.25

1.1

61.3

38.3

Minor 5ss

32.7

-2

3.1

40.1

Minor BPS

75.9

0.79

78.34

30.9

Associated Gene:

Gene:

CRISPLD2

Ensembl Gene ID:

ENSAPLG00000011940

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020988

17962013 - 17984753

22741

ENSAPLT00000012473

17959802 - 17981903

22102