About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_1797214_1798551_F

Intron Information:

Intron Rank:
128466
Intron Class:
major
Intron Phase:
Intron Coordinates:
1797214 - 1798551
Intron Length:
1338

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGGGGT
5'SS Class:
strong_major
3'SS Sequence:
TTACCTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAC
U12 Branch Point Sequence:
TCTTCTTTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
68.2
43
Major BPS
74
0.6
1
65.6
41.1
Major PPT
81.1
0.7
0.8
76.5
32
Minor 5ss
31.4
-2.1
3.7
47.2
48.2
Minor BPS
73.7
0.82
1.6
87.23
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019192
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019821
1787598 - 1800916
13319