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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_17974103_17974700_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17974103 - 17974700
Intron Length:
598

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTTT
5'SS Class:
strong_major
3'SS Sequence:
ATATCTTTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
TATATCTTTACT
Flanking Amino Acid:
RDKCRGSTCNRYLCPAGCLY
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
81.4
33
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
69.8
0.45
1
63.8
41.9
Minor 5ss
42.7
-0.8
3.4
64.6
46.7
Minor BPS
65.6
0.57
1.7
81.59
39.4

Associated Gene:

Gene:
CRISPLD2
Ensembl Gene ID:
ENSAPLG00000011940
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020988
17962013 - 17984753
22741
ENSAPLT00000012473
17959802 - 17981903
22102