About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_17976080_17976529_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17976080 - 17976529
Intron Length:
450

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTCCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
CTGTGTTTATTT
Flanking Amino Acid:
SNAFMVSKVTTQTLDCYTTV
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
85.1
0.79
0.7
81
30.8
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
48.6
-0
2
66.59
45.3

Associated Gene:

Gene:
CRISPLD2
Ensembl Gene ID:
ENSAPLG00000011940
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012473
17959802 - 17981903
22102
ENSAPLT00000020988
17962013 - 17984753
22741