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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_179813_180059_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
179813 - 180059
Intron Length:
247

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAGTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAA
U12 Branch Point Sequence:
TACACGATGACA
Flanking Amino Acid:
LKAKFGFGSTRDFDANLYLC
Intron Amino Acid Position:
388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
80.7
31.7
Major BPS
75.5
0.63
1
66
40.9
Major PPT
89.1
0.88
0.6
89
20.2
Minor 5ss
42.5
-0.8
3.5
64.3
47.2
Minor BPS
44.1
-0.4
2.3
57.12
41.9

Associated Gene:

Gene:
DPY19L3
Ensembl Gene ID:
ENSAPLG00000012920
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031327
162016 - 195127
33112
ENSAPLT00000024410
163632 - 195127
31496
ENSAPLT00000013474
162016 - 195127
33112
ENSAPLT00000032210
156791 - 195127
38337