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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_18039351_18039492_F

Intron Information:

Intron Rank:
135687
Intron Class:
major
Intron Phase:
Intron Coordinates:
18039351 - 18039492
Intron Length:
142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
TTCTAATTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTTCTTTGAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
73.3
36.4
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
83
0.74
0.8
76.6
36.2
Minor 5ss
30.8
-2.2
3.3
41.8
45
Minor BPS
78
0.96
1.3
92.24
29.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023028
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037231
18036025 - 18039527
3503