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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_18056454_18058346_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18056454 - 18058346
Intron Length:
1893

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTGCC
5'SS Class:
major
3'SS Sequence:
CATCTCTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CTTTTCTCATCT
Flanking Amino Acid:
SVRKNHVYSCRFSRQCVIDK
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.2
66.4
40.8
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
77.3
0.61
0.8
68.9
36.7
Minor 5ss
38.4
-1.3
3.3
53.8
43.4
Minor BPS
59.4
0.37
1.9
79.56
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011331
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038235
18056158 - 18074792
18635
ENSAPLT00000029265
18049520 - 18071170
21651
ENSAPLT00000011830
18049520 - 18072949
23430