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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_18067096_18067656_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18067096 - 18067656
Intron Length:
561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACGTGC
5'SS Class:
major
3'SS Sequence:
GTGCCACCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
GAAAACTTAATG
Flanking Amino Acid:
AFCELPLDDQVALLRAHAGE
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.2
60.9
40.9
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
66.7
0.38
1
55.5
40.3
Minor 5ss
37.2
-1.5
3.3
50.2
46.4
Minor BPS
51.6
-0
1.6
52.68
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011331
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038235
18056158 - 18074792
18635
ENSAPLT00000029265
18049520 - 18071170
21651
ENSAPLT00000011830
18049520 - 18072949
23430