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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_18067745_18068391_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18067745 - 18068391
Intron Length:
647

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAGTAG
5'SS Class:
major
3'SS Sequence:
CTCATCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
GATTTCTCATCT
Flanking Amino Acid:
SIPYTDFLLLGNDFIIPMHC
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
69
38.3
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
73.7
0.53
0.8
65.1
36.2
Minor 5ss
35.4
-1.7
3.3
45.9
49.3
Minor BPS
55.4
0.25
1.8
74.16
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011331
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038235
18056158 - 18074792
18635
ENSAPLT00000029265
18049520 - 18071170
21651
ENSAPLT00000011830
18049520 - 18072949
23430