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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_18068545_18070709_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18068545 - 18070709
Intron Length:
2165

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
CTCCCCTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
CATCAATTAATT
Flanking Amino Acid:
CLKAIIFFDPDCKGLSEPGK
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
78.3
32.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
73.4
0.53
0.8
64.8
30.7
Minor 5ss
43
-0.8
3
58.3
46.6
Minor BPS
51.2
0.11
1.8
69.19
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011331
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038235
18056158 - 18074792
18635
ENSAPLT00000029265
18049520 - 18071170
21651
ENSAPLT00000011830
18049520 - 18072949
23430