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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_18070947_18071576_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18070947 - 18071576
Intron Length:
630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGAACC
5'SS Class:
strong_major
3'SS Sequence:
AATTCCTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
ACGTCCTTATCC
Flanking Amino Acid:
DSLLQEMLLGGSTIDLQYQS
Intron Amino Acid Position:
375

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
72.7
36.9
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
77.6
0.62
0.9
70.7
35
Minor 5ss
33.7
-1.9
3.1
44.5
43
Minor BPS
64.9
0.45
1.6
68.47
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011331
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038235
18056158 - 18074792
18635
ENSAPLT00000011830
18049520 - 18072949
23430