About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_18084776_18087612_R


Intron Information:

Intron Rank:
2

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
18084776 - 18087612

Intron Length:
2837

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CCA|GTAAGTATG

5'SS Class:
major

3'SS Sequence:
GAAATGATTTCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTTAAT

U12 Branch Point Sequence:
TCTCTTTTAATT

Flanking Amino Acid:
SHLRTMLTDPGAVPKGNATK

Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
78
0.66
1
75.9
39.9

Major BPS
99.5
1.23
0.5
98.2
4.2

Major PPT
61.8
0.27
1.1
55.5
48.1

Minor 5ss
41.5
-0.9
2.8
57.1
41.1

Minor BPS
71
0.74
1.1
80.3
36.2

Associated Gene:

Gene:
ZDHHC7

Ensembl Gene ID:

Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

18077264 - 18095559
18296

18077264 - 18089859
12596