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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_18087936_18089773_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
18087936 - 18089773
Intron Length:
1838

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCAGT
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
GTTTCCTCACAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
74.4
41.9
Major BPS
80
0.75
1
78.6
31
Major PPT
77.5
0.62
0.8
69.8
36.6
Minor 5ss
47.2
-0.3
2.6
66.5
44.6
Minor BPS
56.5
0.28
2
78.72
42.9

Associated Gene:

Gene:
ZDHHC7
Ensembl Gene ID:
ENSAPLG00000011224
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011690
18077264 - 18089859
12596