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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_18117610_18118103_F

Intron Information:

Intron Rank:
142479
Intron Class:
major
Intron Phase:
Intron Coordinates:
18117610 - 18118103
Intron Length:
494

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGGTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
TCTTTCTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
79.3
34.3
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
87.8
0.85
0.7
83.3
25.1
Minor 5ss
34.5
-1.8
3.9
55
49.2
Minor BPS
69.2
0.6
1.7
78.35
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026769
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026632
18112638 - 18118644
6007