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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_18147178_18149086_R

Intron Information:

Intron Rank:
130103
Intron Class:
major
Intron Phase:
Intron Coordinates:
18147178 - 18149086
Intron Length:
1909

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTCG
5'SS Class:
major
3'SS Sequence:
TTTTCCTTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATACAC
U12 Branch Point Sequence:
CTATACACAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
65.7
41
Major BPS
65
0.37
1
73
31.6
Major PPT
87.7
0.85
0.7
80.8
31.1
Minor 5ss
43.5
-0.7
2.9
56.7
47.6
Minor BPS
48.8
-0
2
71.62
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017210
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046614
18146660 - 18149576
2917