About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_182280_183732_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
182280 - 183732
Intron Length:
1453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACC
5'SS Class:
strong_major
3'SS Sequence:
ATTATTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATTAT
U12 Branch Point Sequence:
GTATCATTATTT
Flanking Amino Acid:
DCFDMLPTAKVTWLYIIQIS
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
81.6
30
Major BPS
72.1
0.55
1.1
62.3
43.7
Major PPT
86.3
0.82
0.8
80.5
36.4
Minor 5ss
34.7
-1.7
2.9
44.4
43.1
Minor BPS
56.6
0.28
1.9
75.14
41.3

Associated Gene:

Gene:
DPY19L3
Ensembl Gene ID:
ENSAPLG00000012920
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013474
162016 - 195127
33112
ENSAPLT00000032210
156791 - 195127
38337
ENSAPLT00000031327
162016 - 195127
33112
ENSAPLT00000024410
163632 - 195127
31496