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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_18450367_18450471_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
18450367 - 18450471
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTACTGTAA
5'SS Class:
weak_major
3'SS Sequence:
TTTCTTCACACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
CCTTTCTTCACA
Flanking Amino Acid:
FWLYRSSKLPGSHQACCSIK
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.3
0.03
1.1
49.9
37.2
Major BPS
77.5
0.68
1
79.6
33
Major PPT
81
0.7
0.8
76.8
30.8
Minor 5ss
37.2
-1.4
3.5
51.1
46.7
Minor BPS
62.4
0.38
1.8
70.02
42.9

Associated Gene:

Gene:
MTHFSD
Ensembl Gene ID:
ENSAPLG00000011022
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011487
18450317 - 18463097
12781