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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_18453268_18454126_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18453268 - 18454126
Intron Length:
859

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTCAC
U12 Branch Point Sequence:
CTACCCTCACCT
Flanking Amino Acid:
VVGSVAVSEKGWRIGKGEGY
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83
23.8
Major BPS
60.1
0.25
1.1
62.9
34.3
Major PPT
75.6
0.58
1
73.5
41.9
Minor 5ss
37.3
-1.4
3
46.9
48.4
Minor BPS
51.4
0.12
1.9
70.75
45.6

Associated Gene:

Gene:
MTHFSD
Ensembl Gene ID:
ENSAPLG00000011022
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011487
18450317 - 18463097
12781