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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_18454240_18454403_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18454240 - 18454403
Intron Length:
164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTGTTTTTAACA
Flanking Amino Acid:
PVVTIVHDCQVLDISEELLD
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83
23.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
85.6
0.8
0.6
81.9
23
Minor 5ss
37.3
-1.4
3
46.9
48.4
Minor BPS
79.5
0.92
1
82.37
32.8

Associated Gene:

Gene:
MTHFSD
Ensembl Gene ID:
ENSAPLG00000011022
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011487
18450317 - 18463097
12781