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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_18454530_18462575_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18454530 - 18462575
Intron Length:
8046

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
CCTCCTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
AATCTCATAATT
Flanking Amino Acid:
PKPQGILWHKVSYEMLAKIP
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.8
1.13
0.8
80.1
38.1
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
81.5
0.71
0.7
80
25.3
Minor 5ss
30.2
-2.3
3.8
42.9
44.7
Minor BPS
58.3
0.34
1.6
74.03
36.2

Associated Gene:

Gene:
MTHFSD
Ensembl Gene ID:
ENSAPLG00000011022
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011487
18450317 - 18463097
12781