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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_18471294_18472908_R

Intron Information:

Intron Rank:
131860
Intron Class:
major
Intron Phase:
Intron Coordinates:
18471294 - 18472908
Intron Length:
1615

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
CGCTTTCTGGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.84
0.9
74.8
38.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
68
0.41
1
65.2
36.3
Minor 5ss
40.1
-1.1
3.1
55.9
48.3
Minor BPS
63.9
0.52
1.8
83.32
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018150
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020389
18470750 - 18473125
2376