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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_18506_18947_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18506 - 18947
Intron Length:
442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATACTA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TCTTTATTATCT
Flanking Amino Acid:
KAPLYDDLKKELTREKFLGP
Intron Amino Acid Position:
362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
73.6
37
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
85.4
0.8
0.6
84.9
22.8
Minor 5ss
35.6
-1.6
3.2
48.3
47.2
Minor BPS
60.3
0.4
1.9
80.47
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011417
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011896
3649 - 30288
26640