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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_186268_187124_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
186268 - 187124
Intron Length:
857

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGTAA
5'SS Class:
major
3'SS Sequence:
CTTTATCATTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTCTCTTTATCA
Flanking Amino Acid:
QMIQAASIQQGLHGLVYDNK
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
66.4
35
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
68.7
0.42
1.1
72.6
36.7
Minor 5ss
42.2
-0.9
3.1
55.3
48.9
Minor BPS
70.8
0.65
1.6
78.76
38.3

Associated Gene:

Gene:
DPY19L3
Ensembl Gene ID:
ENSAPLG00000012920
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024410
163632 - 195127
31496
ENSAPLT00000013474
162016 - 195127
33112
ENSAPLT00000032210
156791 - 195127
38337
ENSAPLT00000031327
162016 - 195127
33112