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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_18700269_18700680_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
18700269 - 18700680
Intron Length:
412

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAC|GCCGGGAAG
5'SS Class:
weak_major
3'SS Sequence:
TCAATATAGGTAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AAATCAA
U12 Branch Point Sequence:
AAAAAATCAATA
Flanking Amino Acid:
KSMFRIPWKHLCAYLCALIG
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.8
0.02
1.9
53.5
43.8
Major BPS
62.4
0.31
1
64
32.1
Major PPT
55.1
0.12
1.1
51.7
41.8
Minor 5ss
16.7
-3.8
3.6
20.6
29.4
Minor BPS
42
-0.6
1.8
48.05
34.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021706
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020663
18700209 - 18700806
598