Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_18704874_18707567_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18704874 - 18707567

Intron Length:

2694

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGGGGTCC

5'SS Class:

major

3'SS Sequence:

TCTGTCCCAGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTCAC

U12 Branch Point Sequence:

GGCCCCTCACCT

Flanking Amino Acid:

RDYESTLLDEYRAWIRRDYG

Intron Amino Acid Position:

260

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.3

0.6

63.5

37.7

Major BPS

60.1

0.25

1.1

62.9

34.3

Major PPT

72.1

0.5

0.9

67.3

33.9

Minor 5ss

31.2

-2.2

3.4

41.3

45.5

Minor BPS

48.1

-0

1.9

63.55

45.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021849

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029273

18704309 - 18714127

9819

ENSAPLT00000028993

18704309 - 18713122

8814

ENSAPLT00000022449

18704543 - 18713122

8580