Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_18707740_18708234_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18707740 - 18708234

Intron Length:

495

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGAGAGCC

5'SS Class:

major

3'SS Sequence:

CCGCCCCTGGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTGAC

U12 Branch Point Sequence:

TCCTCCTGACAC

Flanking Amino Acid:

RLRGGGCLVHCLAGVSRSTT

Intron Amino Acid Position:

202

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.66

0.9

64.8

33.2

Major BPS

68.9

0.47

59.2

39.1

Major PPT

62.5

0.28

57.2

33.3

Minor 5ss

26.4

-2.7

3.2

36.4

Minor BPS

49.1

-0

1.9

60.18

44.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021849

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029273

18704309 - 18714127

9819

ENSAPLT00000028993

18704309 - 18713122

8814

ENSAPLT00000022449

18704543 - 18713122

8580