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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_18708310_18709099_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18708310 - 18709099
Intron Length:
790

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTCCT
5'SS Class:
major
3'SS Sequence:
TCTCTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTCAC
U12 Branch Point Sequence:
CCGGCCTCACTC
Flanking Amino Acid:
CRAAESPAIFGMQHFKKCIK
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
68
42.9
Major BPS
54.7
0.12
1.2
59.2
39.1
Major PPT
78.7
0.65
0.7
73.3
24.9
Minor 5ss
42.5
-0.8
2.8
51.6
44.8
Minor BPS
43.4
-0.5
1.9
45.3
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021849
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022449
18704543 - 18713122
8580