About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_18710448_18712708_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18710448 - 18712708
Intron Length:
2261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GTTGCCCTCACT
Flanking Amino Acid:
VHTGAKPVLEDMSYLCISAS
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.8
38.7
Major BPS
100
1.24
0.5
100
0
Major PPT
86.8
0.83
0.7
81.6
28.7
Minor 5ss
32.4
-2
3
40.4
45.7
Minor BPS
52.1
0.15
2.2
77.42
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021849
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029273
18704309 - 18714127
9819
ENSAPLT00000028993
18704309 - 18713122
8814
ENSAPLT00000022449
18704543 - 18713122
8580