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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_18716668_18717605_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18716668 - 18717605
Intron Length:
938

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTCCT
5'SS Class:
major
3'SS Sequence:
ATTTTTTCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAAAAA
U12 Branch Point Sequence:
ATTTGCTTCATT
Flanking Amino Acid:
TALSVDEKVELYRIKFNETY
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1.3
71.4
40.3
Major BPS
53.6
0.09
1
59.9
32.5
Major PPT
86.5
0.82
0.7
85.4
28.5
Minor 5ss
32.8
-2
2.9
42
37.6
Minor BPS
58.7
0.35
2.2
81.92
40.2

Associated Gene:

Gene:
COX4I1
Ensembl Gene ID:
ENSAPLG00000010205
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010635
18715594 - 18718761
3168