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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_18725379_18725508_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18725379 - 18725508
Intron Length:
130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATCGA
5'SS Class:
major
3'SS Sequence:
ATTCCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CCAGGCTTAATT
Flanking Amino Acid:
PKVQLHFSAQIDSWCKENSY
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1.1
62.4
43.9
Major BPS
100
1.24
0.5
100
0
Major PPT
85.4
0.8
0.8
77.2
36.4
Minor 5ss
31.9
-2.1
3.1
41.8
44.6
Minor BPS
50.5
0.09
1.9
63.75
47.1

Associated Gene:

Gene:
EMC8
Ensembl Gene ID:
ENSAPLG00000026906
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047047
18725199 - 18728960
3762