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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_18725586_18726896_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18725586 - 18726896
Intron Length:
1311

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTTGG
5'SS Class:
strong_major
3'SS Sequence:
CCTTCCGCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
TTCCCTTTACCT
Flanking Amino Acid:
YQANERVKDASPNQVAEKVA
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
67.5
40.3
Major BPS
77.3
0.68
1
81.5
27
Major PPT
75.7
0.58
0.8
69
31.5
Minor 5ss
40.2
-1.1
2.7
49.2
47.1
Minor BPS
65.5
0.56
1.6
80.9
41.2

Associated Gene:

Gene:
EMC8
Ensembl Gene ID:
ENSAPLG00000026906
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047047
18725199 - 18728960
3762