About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_18738702_18738790_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18738702 - 18738790
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGCGGG
5'SS Class:
major
3'SS Sequence:
TTTTTCCCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGGCAG
U12 Branch Point Sequence:
TTTTTGGCAGCA
Flanking Amino Acid:
YMELTKLLLNYASDNIPKAD
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.4
0.44
1.1
53.5
44
Major BPS
44.4
-0.3
1.8
57.1
49.4
Major PPT
85.3
0.79
0.7
78
30.8
Minor 5ss
37.6
-1.4
3.4
48.1
43.2
Minor BPS
39.7
-0.7
2.7
62.77
43.8

Associated Gene:

Gene:
GINS2
Ensembl Gene ID:
ENSAPLG00000024989
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031459
18736611 - 18739666
3056