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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_18742025_18742410_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18742025 - 18742410
Intron Length:
386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
TGTTTCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
AACCCCACAACC
Flanking Amino Acid:
TAEQLSHSMAELRSQKQKLA
Intron Amino Acid Position:
1128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
63.5
42.9
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
78.7
0.65
0.8
70.3
36.3
Minor 5ss
27.1
-2.6
3
31.9
42.5
Minor BPS
47.8
-0.1
1.8
57.41
40.4

Associated Gene:

Gene:
GSE1
Ensembl Gene ID:
ENSAPLG00000020408
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043075
18741890 - 18752702
10813