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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_18742515_18742755_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18742515 - 18742755
Intron Length:
241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGTGG
5'SS Class:
major
3'SS Sequence:
CCGTGCCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTCAG
U12 Branch Point Sequence:
GGGCGCTCAGCC
Flanking Amino Acid:
IFEAYQEHIEEQNLERQVLQ
Intron Amino Acid Position:
1093

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1.1
61.3
45.8
Major BPS
47.4
-0.1
1.6
54.7
43.1
Major PPT
72.7
0.51
0.9
65.1
36.3
Minor 5ss
34.7
-1.7
3.5
46.4
49
Minor BPS
40.7
-0.7
2
46.03
42.1

Associated Gene:

Gene:
GSE1
Ensembl Gene ID:
ENSAPLG00000020408
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043075
18741890 - 18752702
10813