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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_18743596_18743690_R

Intron Information:

Intron Rank:
13
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
18743596 - 18743690
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAT|GCAGGGCGC
5'SS Class:
major
3'SS Sequence:
GGGCATCGCCGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GGAGAAA
U12 Branch Point Sequence:
TGCTGCTGGACC
Flanking Amino Acid:
LGVSLRDPGDKAAEPGRLEQ
Intron Amino Acid Position:
900

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.3
63.3
37.8
Major BPS
38.5
-0.7
1.4
35.7
39.7
Major PPT
42.6
-0.4
1.7
34.9
40.9
Minor 5ss
21.8
-3.2
4.2
36.3
41.3
Minor BPS
49.6
-0
2
63.25
42.5

Associated Gene:

Gene:
GSE1
Ensembl Gene ID:
ENSAPLG00000020408
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043075
18741890 - 18752702
10813