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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_18744282_18744512_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18744282 - 18744512
Intron Length:
231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGGGGT
5'SS Class:
major
3'SS Sequence:
CCTGGCGCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGGTAAC
U12 Branch Point Sequence:
CTGGAGGTAACC
Flanking Amino Acid:
PPLKLDTSSEKLEFLQLFGL
Intron Amino Acid Position:
750

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
68
43.2
Major BPS
50.5
0.01
1.3
53.1
40.5
Major PPT
60.7
0.24
1
49.7
39.3
Minor 5ss
29.9
-2.3
3.8
46.9
48.5
Minor BPS
38.2
-0.9
2.6
50.24
46.5

Associated Gene:

Gene:
GSE1
Ensembl Gene ID:
ENSAPLG00000020408
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043075
18741890 - 18752702
10813