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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_18745567_18746692_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18745567 - 18746692
Intron Length:
1126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCTC
5'SS Class:
major
3'SS Sequence:
CCTCTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
CTGTCCTCACCT
Flanking Amino Acid:
PEPEHRPENPRSGPSRHEPS
Intron Amino Acid Position:
525

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.9
38.9
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
75
0.56
0.7
69
24.7
Minor 5ss
33.9
-1.8
3.7
49.6
47
Minor BPS
58
0.33
1.9
75.86
46.7

Associated Gene:

Gene:
GSE1
Ensembl Gene ID:
ENSAPLG00000020408
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043075
18741890 - 18752702
10813