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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_18748353_18748471_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18748353 - 18748471
Intron Length:
119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TCCCCCCCGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
TGCTCCTCACCG
Flanking Amino Acid:
VVQDSRFPPLNLQRPVHHVV
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
0.9
71.6
40.2
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
66.1
0.36
0.9
61.5
29
Minor 5ss
34.1
-1.8
3
41.6
39
Minor BPS
52.1
-0
2
60.32
47.1

Associated Gene:

Gene:
GSE1
Ensembl Gene ID:
ENSAPLG00000020408
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043075
18741890 - 18752702
10813