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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_18843483_18844724_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18843483 - 18844724
Intron Length:
1242

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
CCTCTTTCAAAT
Flanking Amino Acid:
HHRMSGGRQEEFRTWLREEW
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
78.9
35.3
Major BPS
77.3
0.68
1
81.5
27
Major PPT
83.2
0.75
0.8
77.6
31.2
Minor 5ss
34
-1.8
3.5
46.6
48.7
Minor BPS
48
-0
1.6
62.03
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026309
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034858
18842536 - 18846916
4381
ENSAPLT00000005548
18842536 - 18848215
5680