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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_18870688_18873656_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18870688 - 18873656
Intron Length:
2969

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGACCC
5'SS Class:
major
3'SS Sequence:
TCGTTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCCAAA
U12 Branch Point Sequence:
TGGTGCCAAAGG
Flanking Amino Acid:
CERRKRSPTTREKWCHMTQE
Intron Amino Acid Position:
327

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
63.4
41.4
Major BPS
49
-0
1.3
56.7
38.7
Major PPT
82.7
0.74
0.8
77.1
31.6
Minor 5ss
31.8
-2.1
3.3
42.8
44.3
Minor BPS
37.7
-1
2.4
44.2
47.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005230
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043031
18869976 - 18876373
6398