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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_18874042_18874322_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18874042 - 18874322
Intron Length:
281

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
CCTGTCCCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTGAC
U12 Branch Point Sequence:
CTGTCCCCACAG
Flanking Amino Acid:
DRPKERLKKTVSVQSPEEEK
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
68.5
38.7
Major BPS
53.6
0.09
1.4
48.8
46.3
Major PPT
71.9
0.49
0.8
64.7
31
Minor 5ss
26.2
-2.7
2.9
22.7
37.4
Minor BPS
40.1
-0.8
2.1
45.45
46.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005230
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043031
18869976 - 18876373
6398
ENSAPLT00000005402
18869976 - 18876373
6398