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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_18894550_18895720_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18894550 - 18895720
Intron Length:
1171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAATATAT
5'SS Class:
major
3'SS Sequence:
TCTCTCCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAA
U12 Branch Point Sequence:
CTGTTGTCAACC
Flanking Amino Acid:
NEDYPRTCRVCFYGTGLIAG
Intron Amino Acid Position:
461

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
72.3
33
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
83.2
0.75
0.7
77.4
24.6
Minor 5ss
39.8
-1.1
3.1
53.3
44.9
Minor BPS
47.8
-0.1
2.2
61.55
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005355
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040835
18894327 - 18924169
29843
ENSAPLT00000031779
18894327 - 18924276
29950
ENSAPLT00000027677
18894327 - 18924169
29843