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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_18898993_18899696_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18898993 - 18899696
Intron Length:
704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
ATGCTAACTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
ACCTTCTAAATT
Flanking Amino Acid:
HKGPHNGHIQIVKKDEFSTK
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.8
83.9
30.3
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
67.9
0.4
1
59.6
40.2
Minor 5ss
44.3
-0.6
3.1
64.1
47.4
Minor BPS
57.3
0.31
1.7
68.91
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005355
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027677
18894327 - 18924169
29843
ENSAPLT00000040835
18894327 - 18924169
29843
ENSAPLT00000031779
18894327 - 18924276
29950