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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_18907052_18923811_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18907052 - 18923811
Intron Length:
16760

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
CTGTGTCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTTAC
U12 Branch Point Sequence:
TGTGCCTGAGCT
Flanking Amino Acid:
QKQSALFVYQEYGVCENLRK
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.7
33.8
Major BPS
62.6
0.31
1.2
55.1
41.7
Major PPT
79.3
0.66
0.9
73
37.4
Minor 5ss
39.7
-1.2
2.8
49.8
46.2
Minor BPS
57.7
0.32
1.9
77.99
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005355
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040835
18894327 - 18924169
29843
ENSAPLT00000031779
18894327 - 18924276
29950
ENSAPLT00000027677
18894327 - 18924169
29843