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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_18927165_18929470_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18927165 - 18929470
Intron Length:
2306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
CTGCCTTTCACA
Flanking Amino Acid:
IREQHPTKIPVIIERYKGEK
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
76.5
39.2
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
85.8
0.81
0.8
77.8
36.7
Minor 5ss
39.3
-1.2
3
54.6
42.6
Minor BPS
54.4
0.13
1.8
64.04
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020659
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040055
18924886 - 18931561
6676