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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_18929578_18931386_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18929578 - 18931386
Intron Length:
1809

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTATGC
5'SS Class:
major
3'SS Sequence:
CTCCCCCTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTGCAC
U12 Branch Point Sequence:
CTCCCCCTCACA
Flanking Amino Acid:
VNMSELIKIIRRRLQLNSNQ
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.1
59.7
40.5
Major BPS
52.5
0.06
1.4
65.3
41.6
Major PPT
74.4
0.55
0.7
67.7
25.8
Minor 5ss
37
-1.5
3.3
50.9
45.6
Minor BPS
47.8
-0.1
2.1
61.14
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020659
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040055
18924886 - 18931561
6676