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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_18940574_18940667_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18940574 - 18940667
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTAAGCAGA
5'SS Class:
major
3'SS Sequence:
TTTCTGTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATAGACG
Flanking Amino Acid:
SSDSAEENERRLEIHLDGSE
Intron Amino Acid Position:
576

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.3
68.9
43.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
76.6
0.6
0.8
69.7
36.7
Minor 5ss
40.1
-1.1
2.8
47.9
41.4
Minor BPS
48.2
-0.2
2
60.02
41.9

Associated Gene:

Gene:
ZCCHC14
Ensembl Gene ID:
ENSAPLG00000005595
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005794
18937277 - 18985302
48026